Tuning promoter boundaries improves regulatory motif discovery in non-model plants: the peach example

Modules	Gene profiles	Motif-discovery Oligos \| Dyads		Motif-scanning
M1	Gene Ids	(AT)_homopolymer	(AT)_homopolymer	---
M2	Gene Ids	(AT)_homopolymer	(AT)_homopolymer	---
M3	Gene Ids	(AT)_homopolymer	---	---
M4	Gene Ids	---	(AT)_homopolymer	---
M5	Gene Ids	---	---	---
M6	Gene Ids	(AT)_homopolymer	(AT)_homopolymer	---
M7	Gene Ids	---	---	---
M9	Gene Ids	Matrix.tf Annotation	Matrix.tf Annotation	Positions
M10	Gene Ids	Matrix.tf Annotation	Matrix.tf Annotation	Positions
M11	Gene Ids	Matrix.tf Annotation	Matrix.tf Annotation	Positions
M18	Gene Ids	---	Matrix.tf Annotation	Positions
M21	Gene Ids	Matrix.tf Annotation	Matrix.tf Annotation	Positions
M24	Gene Ids	---	---	---
M25	Gene Ids	---	---	---
M28	Gene Ids	---	---	---
M41	Gene Ids	Matrix.tf Annotation	Matrix.tf Annotation	Positions
M43	Gene Ids	---	---	---
M44	Gene Ids	---	---	---