Tuning promoter boundaries improves regulatory motif discovery in non-model plants: the peach example

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Modules Gene profiles Motif-discovery
Oligos | Dyads 		Motif-scanning
M1 Matrix.tf     Annotation Matrix.tf     Annotation
Positions
M2 Matrix.tf     Annotation Matrix.tf     Annotation
Positions
M3 --- --- ---
M4 Matrix.tf     Annotation ---
M5 Matrix.tf     Annotation ---
M6 --- --- ---
M7 Matrix.tf     Annotation ---
M9 Matrix.tf     Annotation Matrix.tf     Annotation
M10 --- --- ---
M11 Matrix.tf     Annotation ---
M18 --- --- ---
M21 Matrix.tf     Annotation ---
M24 Matrix.tf     Annotation Matrix.tf     Annotation
Positions
M25 Matrix.tf     Annotation ---
M28 Matrix.tf     Annotation Matrix.tf     Annotation
M41 Matrix.tf     Annotation Matrix.tf     Annotation
M43 --- --- ---
M44 --- --- ---